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Biomedical Research

An International Journal of Medical Sciences

Research Article - Biomedical Research (2018) Volume 29, Issue 1

Essential oil of Coffee arabica L. husks: a brilliant source of antimicrobial and antioxidant agents

Hanan M. Al-Yousef* and Musarat Amina

Department of Pharmacognosy, College of Pharmacy, King Saud University, Riyadh, Saudi Arabia

*Corresponding Author:
Hanan M. Al-Yousef
Department of Pharmacognosy
College of Pharmacy
King Saud University, Saudi Arabia

Accepted date: October 26, 2017

DOI: 10.4066/biomedicalresearch.29-17-867

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The aim of present research work was to explore the constituents of the coffee husks oil obtained from Coffee arabica. L (Rubiaceae). Hydrodistillation extraction has been applied to extraction of volatile oil from coffee husks of C. arabica and the chemical constituents of the oil has been investigated by using by Gas Chromatography (GC), Gas Chromatography/Mass Spectrometry (GC/MS) and carban-13 Nuclear Magnetic Resonance (13C NMR). GC and GC-MS analysis reveals the presence of fifty five components in a significant amount in the coffee husk volatile oil. The most abundant components present in oil were butylatedhydroxy (65.83%), 1, 2-benzenedicarboxilic acid (7.28%), phenylethyl alcohol (1.69%) and 2, 3-isopropylidene-6-decoxyhexo (1.63%). Essential oil as well as ethanol extract were screened for antimicrobial and antioxidant activities and were found active against both the assays.


Coffee arabica, GC, GC\MS, 13C-NMR, Antimicrobial, Antioxidant


Production of large volumes of wastes from agricultural activity and food industry during the processing, production, and consumption of food has increased waste disposal which could result in severe environmental pollution problems and represent a loss of valuable biomass and nutrients [1]. In the recent years, several processes have been developed to utilize these industrial residues for the production of value-added phytochemicals and fine product such as ethanol, mushrooms, organic acids, enzymes, amino acids and secondary metabolites with interesting biological activities [2-4]. Consequently, the food and agricultural wastes nowadays are receiving great attention, as they represent a possible and utilizable resource for conversion to useful products [5]. Coffee (Coffee sp.) is considered as one of the most popular food commodities in the world and ranked second after oil in terms of currency traded globally [6]. The large production and consumption of coffee generates sizeable volumes of solid residues such as coffee husks and pulps [7]. Coffee husks/pulps are mucilaginous fibrous substance containing some amount of caffeine, tannins and phenolic compound [8,9], which makes the by-product highly toxic and slow degradation in nature, resulting in disposable problem [10]. However, literature studies has shown that coffee husk is rich in, carbohydrates, protein, organic matter (hemicelluloses, cellulose, lignin and pectin) [11,12] and chemical nutrients such as nitrogen and potassium [13], which makes it ideal substrate for the production of useful products [14]. Moreover, very recently coffee husks are reported to be the potential source of anthocyanin cyanidin-3-rutinoside [15]. Commercially coffee husks has been used as a fermented tea such as coffee cherry tea, cascara, sultana, qishrorbun, whereas coarse powdered coffee husks are used as food supplements in granolas, smoothies and juices. Although the reported applications of coffee husks includes, as an additive in animal feed, production of bulky chemical compounds, fermentation for production of numerous products [16], as an absorbents [17], as a fertilizers [18] and as a raw material for fuel production [19]. However, keeping in consideration the sizeable amounts generated and only a small portion of this solid residue is being used for practical applications, there is still need to find other alternative uses for this frequently produced solid residue.

Considering the growing knowledge of health-promoting potential of secondary metabolites and presence of various types of important compounds in the coffee husk residue, the isolation of these chemical constituents appears as an efficient alternative to increase the aggregated value of the agroindustrial wastes. A number of phytochemical studies have been conducted for the evaluation of pharmacologically constituents in the coffee husk to deal with its reported medicinal properties. However, there is no data reported in the literature regarding oil extraction and its constituents from coffee husk.

In the present study our focus is on coffee husks, an agro- and food industry wastes that can be utilized as a valuable and cheap source of antioxidants and free radical scavenging compounds. We have chosen coffee husks of Coffee arabica, an economically important variety of genus Coffea, growing in Saudi Arabia. Among all the species, C. arabica is considered as superior due to its armoa and sensory properties [20] and therefore reaches higher prices in the international markets [21]. Phytochemical studies on non-volatile fraction of C. arabica coffee seeds showed the presence of carbohydrates, fibers, amino acids, lipids, minerals, organic acids, chlorogenic acid, trigonellic and caffeine [22,23], whereas volatile fraction was found to be composed of hundred different types of volatile compounds such as alcohol, esters, hydrocarbons, aldehydes, ketones, pyrazines and furans [24]. Furthermore the studies have revealed that maturation of coffee cherries is essential for good composition of volatiles [25]. Thus, keeping in consideration the presence of appreciable amount of volatile content in coffee berries, the possibility of volatiles in coffee husk is high. In the present study, we intend to investigate the volatile composition of husk of C. arabica and evaluation of antimicrobial and antioxidant potential of isolated volatile oil along with alcoholic extract of C. arabica husks.

Materials and Methods

1, 1-diphenyl-2-picrylhydrazyl (DPPH) from ( Sigma St. Louis, MO, USA), Ascorbic acid from Credible suppliers (Shanghi, China), Ampicillin (Sigma-Aldrich), Doxycycline (Sigma-Aldrich), Nystatin( Sigma St. Louis, MO, USA), UV/ visible light spectrophotometer (Spectronic 20 D+, Thermo Scientific, USA), 13C-NMR- Bruker AM 700 (Bruker Topspin Gmbh, Rheinstetten).

Plant material

The fresh coffee berries of C. arabica were collected from the Kholan Bin Amer region of AbdulAziz Al-Melahe Farm (Sana'a, Yamane), northern border of Saudi Arabia. The plant material was identified and authenticated by Dr. Mahmoud Abdul Aziz Mahmoud, and a voucher specimen (PDH#437) has been deposited at the herbarium, college of pharmacy, King Saud University, Riyadh.

Ethanol extract preparation

The air dried coarse powdered coffee husks (CHs, 1.85 kg) were extracted by maceration with 95% ethanol at room temperature. After filtration and the combined ethanolic extract was evaporated using rotary vacuum at 45°C to obtain dark brown gummy extract (153.7 g, yield 8.31% w/w).

Essential oil isolation procedure

Air-dried husks (100) obtained from C. arabica berries were subjected to hydrodistallation for 3-4 h using an all glass Clevenger-type apparatus as per the procedure recommended in Egyptian Pharmacopoeia to obtain essential oil 0.31% v/w yields as presented in the Table 1. The oil collected was dried over anhydrous sodium sulphate and kept at 4°C in sealed colored vial until analysis.

# Name RT Area %  M+
1 Hexanoic acid 10.12 0.98 116.16
2 Benzenemethanol 11.32 0.67 122.16
3 Linalool oxide 12.36 0.29 170.25
4 Trans-linalool oxide 12.84 0.3 170.25
5 Linalool 13.26 0.07 154.25
6 Phenylethyl alcohol 13.66 1.69 122.09
7 Epoxylinalol 15.48 0.15 170.28
8 Octanoic acid 15.76 1.69 144.21
9 Nonanoic acid 18.4 1.58 158.16
10 5-pentyl-2(5 h)-furanone 19.98 0.14 154.2
11 Eugenol 20.36 0.35 164.2
12 4-pentylbutan-4-olide 20.52 0.6 156.22
13 Decanoic acid 20.84 0.23 172.26
14 Phenol, 4-chloro-3, 5-dimethyl- 21.38 0.29 156.05
15 5-isopropyl-6-methyl-hepta-3, 5 22.76 0.18 168.27
16 2, 6-di(t-butyl)-4-hydroxy-4-me 23.08 0.69 236.35
17 Butylated hydroxytoluene 24.2 65.83 220.18
18 Beta-d-arabino-2-hexulopyran 24.66 1.17 234
19 Dodecanamide, n, n-bis (2-hydrox 25.62 0.13 287.43
20 Globulol 25.74 0.2 208
21 2, 3-isopropylidene-6-deoxyhexo 26.12 1.63 220
22 Pentanediamide, n, n'-di-benzoy 27.06 0.14 370
23 Trans-methyl dihydrojasmonate 27.5 0.08 226.45
24 Pregnan-3, 11-diol-20-one 27.9 0.07 334
25 N-hexyl salicylate 28.14 0.16 222.1
26 Heptadecanoic acid 29.14 0.08 270.45
27 Tetradecanoic acid 29.98 0.16 228.24
28 Bis-(3, 5, 5-trimethylhexyl) eth 30.62 0.06 418.16
29 Eicosane 30.76 0.12 282.56
30 2-pentadecanone, 6, 10, 14-trime 31.58 0.6 268.47
31 1, 2-benzenedicarboxylic acid 31.92 7.28 278.34
32 2, 4-difluorobenzene 32.18 0.34 114.09
33 Isoheptadecanol 32.4 0.15 256.46
34 Docosane (cas) 32.78 0.17 310.6
35 Heptadecanoic acid 33.24 0.18 270.21
36 1, 2-benzenedicarboxylic acid 33.78 1.37 278.35
37 Hexadecanoic acid 34.02 0.23 256.26
38 Cholest-5-en-3-ol (3beta.)- 34.92 0.12 386.65
39 1-octadecanol 36.7 0.13 270.49
40 Octadecane 37.06 0.21 254.49
41 Hexatriacontane 39.26 0.24 506.97
42 Tetratetracontane 41.26 0.39 619.19
43 Oxalic acid, hexyl octadecyl e 43.08 0.54 426.67
44 Oxalic acid, 2-ethylhexyl tetr 44.78 1.11 398.61
45 1, 2-benzenedicarboxylic acid, 45.22 0.81 167.06
46 Octadecane, 1-chloro- 45.96 0.1 288.93
47 Hexatriacontane 46.4 0.86 506.52
48 Decane, 1, 1'-oxybis- 47.9 1.59 298.54
49 Hexatriacontane 49.36 1 506.97
50 (2s, 3r)-3-dimethyl-t-butylsilo 50.74 0.93  
51 Heneicosane 52.06 0.71 296.57
52 Heneicosane 53.34 0.64 296.57
53 Docosane 55.78 0.23 310.6
54 Octadecane 55.88 0.21 254.49
55 Tridec-4-en-2-ynal 56.32 0.13 198

Table 1. Chemical composition of the essential oil of Coffee arabica L. husks growing in SA.

Gas chromatography-mass spectroscopy

The GC-MS analysis was performed in a Perkin Elmer Clarus 600 gas chromatograph inked to a mass spectrometer (Turbomass) available at Central Laboratory, College of Pharmacy, King Saud University, Riyadh. An aliquot of 1 μL of extract was injected into the Elite-5MS column of 30 m, 0.25 μm film thickness, 0.25 μm internal diameters. The GCMS system starts with the initial oven temperature of 40°C increasing to 150°C at a rate of 5°C for 2 min, and then to 300°C at a rate of 5°C for 2 min. The injector temperature was maintained at 220°C. The interface temperature was 240°C. Helium was used as a mobile phase at a flow rate of 1.0 ml/ min. Mass spectral detection was carried out in electron ionization mode by scanning at 40 to 600 m/z. Finally, unknown compound was identified by comparing the spectra with that of the National Institute of Standard and Technology library 2005 and Wiley Library 2006. The total time required for analyzing a single sample was 58 min. The results are represented in tabular form.

Carbon-13 nuclear magnetic resonance

13C-NMR spectrum of essential oil was recorded on a Bruker AM 700 operating at 176.0 MHz for 13C-NMR, NMR spectrometer (Research center, college of pharmacy, King Saud University) equipped with a 5 mm probe, in deuterated chloroform. The spectrum was recorded with the following parameters: Pulse Width (PW): 12 μs, Acquisition time (AQ): 0.786432 s for 295.0 K data table with Spectral Width (SW) of 41666.668 Hz (250 ppm). The number of accumulated scans was (NS) 4000 for oil sample. An exponential multiplication of the free induction decay with the line broadening of 0.635783 Hz was applied before transformation.

Identification of components

The components were identified on the basis of GC retention time and matching with Wiley 2006 library as well as by comparison the fragmentation patterns of their mass spectra with those reported in the literatures [26,27] and various of the identified components were identified as phenolic, amides, sesquiterpenes, sterols, fatty acids, furanol compounds, alkanes and alcohols. A total of 55 detectable peaks were selected for essential oil.

Antimicrobial activity

Microorganisms: American Type of Culture Collection (ATCC) standard against various microorganisms namely: Staphylococcus aureus, Escherichia coli, Pseudomonas aeruginosa, and Candida albicans were used.

Antimicrobial assay

The agar well diffusion method, Perez et al. 1990 as adopted earlier, was used. Diluted inoculum (0.1 ml, 105 CFU/ml) of test organism was spread on Muller-Hinton agar plates [28]. Wells of 8 mm diameter were punched into the agar medium and filled with 100 μl of ethanol extract and oil of 100 mg/ml concentration and solvent blank (DMSO) separately. The plates were incubated for overnight at 37°C. The antibacterial activity was evaluated by measuring the zone of inhibition against test organism. Antibiotics (Ampicillin and Doxycycline) were used as positive control against bacteria while Nystatin was used as the control antifungal drugs. Each experiment was performed in triplicate (National committee for Clinical Laboratory Standards, 2002).

Determination of minimum inhibitory concentration (MIC) of ethanol extract and essential oil

Minimum inhibitory concentration of ethanol extract as well as volatile oil of coffee husk against drug resistant clinical strains was determined by broth dilution method, using specific dye (p-iodonitro tetrazolium violet) as an indicator of growth as described by Eloff [29]. Briefly, 2 ml of the plant extract and essential oils were mixed with 2 ml of Muller-Hinton broth (Hi-Media Ltd., Mumbai, India) and serially diluted into the next tube and so on. Actively growing culture (2 ml) of different test strains was added before incubating for overnight, at 37°C. After examining turbidity visually, 0.8 ml of 0.02 mg/ml indicator dye (p-iodonitro tetrazolium violet) was added to each tube and incubated at 37°C. The tubes were examined for the color development, after 30 min. Absence of growth was also confirmed by spreading 0.1 ml of broth from each test tube on normal nutrient agar plates. MIC is defined as the minimum concentration of ethanol extracts as well as essential oil which inhibited the visible growth of test strains.

Antioxidant assay

DPPH radical scavenging assay: Free radical scavenging activity of different ethanol extract and volatile oil of coffee husks against stable 1, 1-diphenyl-2-picrylhydrazyl (DPPH) was determined spectrophotometrically by slightly modified method of Gyamfi et al. as described below [30]. When DPPH reacts with an antioxidant, which can donate hydrogen, it is reduced. The changes in color (from deep-violet to lightyellow) were measured at 517 nm on a UV/visible light spectrophotometer (Spectronic 20 D+, Thermo Scientific, USA). 50 μl of the solvent dried extract in methanol, yielding different concentrations was mixed with 1 ml of 0.1 mM DPPH in methanol solution and 450 μl of 50 mM Tris-HCl buffer (pH 7.4). Methanol (50 μl) was used as a vehicle control in the experiment. After 30 min of incubation at room temperature the reduction of the DPPH free radical was measured spectrophotometrically. Ascorbic acid was used as positive controls. Inhibition percent was calculated from the following equation:

Inhibition (%)=(Absorbance of control-Absorbance of test sample/Absorbance of control) × 100

Statistical analysis

All experiments were performed in triplicates and the data obtained from experiments were presented as mean values and the difference between control and test were analysed using student’s t-test.


The essential oil isolated by hydrodistallation from the coffee husks of C. arabica, dried under different conditions was found to be light yellow liquid with a characteristic aromatic odor, soluble in ether, chloroform, insoluble in water. Fifty five compounds were analysed in the essential oil of coffee husks in which the main components were butylatedhydroxy (17, 65.83%), 1, 2-benzenedicarboxilic acid (31, 7.28%), phenylethyl alcohol (6, 1.69%) and 2, 3-isopropylidene-6- decoxyhexo (21, 1.63%) and these accounted for 82.4% of the oil. While as linalool (5, 0.07%), trans-methyl dihydrojasmonate (23, 0.08%), pregnan-3, 11-diol-20-one (24, 0.07%), heptadecanoic acid (26, 0.08%), cholest-5-en-3-ol (3. BETA) (38, 0.12%), hexadecanoic acid (37, 0.23%), and bis- (3, 5, 5-trimethylhexyl) eth (28, 0.06%) were present as minor constituents (Table 1 and Figures 1-3). All the identified compounds are listed in Table 1 along with their peak numbers and their relative percentage in the composition. The 13C-NMR spectra essential oil was recorded in deuterated chloroform (CDCl3) on a Bruker AM 700, NMR spectrometer operating at 176.0 MHz (Bruker Topspin Gmbh, Rheinstetten, Research center, college of pharmacy, King Saud University) equipped with a 5 mm probe (Figure 4). It showed that the protonated carbon signals are consistent with those of common hydrocarbons. Current results, which describe the first detailed analysis of C. arabica husks by using GC/MS and 13C-NMR, confirm the chemical constituents of this plant.


Figure 1: GC/MS chromatogram of the essential oil of Coffee arabica L. husks growing in SA.


Figure 2: Some compounds isolated from essential oil of Coffee arabica L. husks growing in SA.


Figure 3: Mass spectra of some essential oil components of Coffee arabica L. Husks growing in SA.


Figure 4: 13C NMR spectrum (176.0 MHz, CDCl3) of essential oil components of Coffee arabica L. Husks growing in SA. (10.0 mg, CL). NS=4000, AQ=0.786432 s.

Moreover, biological evaluation of essential oil and extract for antimicrobial and antioxidant activities was also carried out. A comparative biological study were done for the first time isolated volatile oil and total alcohol extract of coffee husks obtained by maceration, presented in Tables 2 and 3. Both volatile oil and total alcohol extract from C. arabica husk possessed antibacterial and antifungal activities against all of the tested gram positive and gram negative bacterial and fungal strain, with the diameters of zone inhibition ranging between 13-17 mm and 14-22 mm for volatile oil and total alcohol extract respectively. The most activity was seen from total alcohol extract and this extract inhibited the growth of all the bacterial strains tested, S. aureus, E. coli, P. aeruginosa by 22.0, 17.0, and 20.0 mm respectively when compare to ampicillin, doxycycline and doxycycline by 21, 25 and 24 mm respectively. Furthermore, about the fungus studied, C. albicans was susceptible to the both volatile oil and total alcohol extract by 15.0 and 14.0 mm, respectively when compare to nystatin by 23 mm, with MIC-values 0.8 and 3.2- >3.2 mg/ml for volatile oil and total alcohol extract respectively. In this Study on C. arabica it has shown that the total alcohol extract offered a potent activity against S. aureus by 22.0 mm (104.8%) when compare to the ampicillin by 21 mm. Moreover, the DPPH-radical scavenging assay exhibited a significant antioxidant activity at a dose dependent manner of both volatile oil and total alcohol extract from C. arabica by 18.39 and 36.4 at 12.5 μg/ml respectively, when compare to ascorbic acid by 34.91 (Table 4).

  Zone of inhibition (mm)
S. aureus E. coli P. aeruginosa C. albicans
Essential oil of coffee husk 14.0 ± 1.3 17.0 ± 1.9 13.0 ± 2.0 15.0 ± 1.3
-66.70% -68.00% -50.00% -65.20%
Total alcohol of coffee husk 22.0 ± 0.5 17.0 ± 2.5 20.0 ± 1.1 14.0 ± 1.2
-104.80% -68.00% -83.30% -60.90%
Ampicillin 21 - - -
Doxycycline - 25 24 -
Nystatin - - - 23

Table 2. Antimicrobial activity of the essential oil and total alcohol extract of Coffee arabica L. Husks growing in SA as inhibition zones (mm).

  Minimum inhibitory concentration (mg/ml)
Samples S. aureus E. coli P. aeruginosa C. albicans
Essential oil of coffee husk 0.8 0.8 0.8 0.8
Total alcohol of coffee husk 3.2 >3.2 3.2 >3.2

Table 3. Minimum Inhibitory Concentration (MIC) of the essential oil and total alcohol extract of Coffee arabica L. Husks growing in SA against bacterial and fungal strains.

Samples Percent decolorization by DPPH method
Concentrations of dry oils (µg/ml)
12.5 25 50 100 200 400
Essential oil of coffee husk 18.39 ± 1.89 40.66 ± 2.45 57.27 ± 1.88 77.37 ± 5.46 84.95 ± 2.52 92.82 ± 0.39
-52.70% -58.50% -65.50% -84.60% -89.70% -97.50%
Total alcohol of coffee husk 36.40 ± 2.77 54.47 ± 3.21 61.50 ± 3.79 74.15 ± 3.41 77.59 ± 2.89 80.31 ± 4.83
-104.30% -78.30% -70.40% -81.04% -81.96% -84.40%
Ascorbic acid 34.91 ± 1.98 69.56 ± 2.64 87.41 ± 1.47 91.5 ± 2.16 94.66 ± 2.18 95.20 ± 1.65

Table 4. Free radical scavenging activity of the essential oil and total alcohol extract of Coffee arabica L. Husks growing in SA by DPPH.


Previous studies showed that there is no data available for the presence of volatile oil in coffee husk. However, presence of oleoresin masses in husk organs in botanical studies indicated the possibility of volatiles is high, which stimulated us to isolate volatile oil and identify it’s various constituents. Hydrodistillation of C. arabica coffee husks yielded 0.31% v/w light yellow liquid with a characteristic odor. GC, GC/MS and 13C NMR analysis of the volatile oil resulted in the identification of 55 compounds. According mass spectra observation, 30% and 40% of compounds present in oil content are hydrocarbon and oxygenated constituents while as aromatic compounds dominates. Biological screening of isolated volatile oil and ethanol extract of C. arabica husk against antimicrobial and antioxidant activities have shown significant activities against all tested bacterial and fungal strain and ethanol extract was found to be the most active against S. aureus, E. coli and P. aeruginosa antibacterial strains. Whereas antifungal activity was susceptible to both volatile oil as well as in ethanol extract. Furthermore, both volatile oil and ethanol extract exhibited promising antioxidant at a dose dependent manner.


The results concluded in this study appear to emphasize on isolation of volatile oil C. Arabica coffee husk, a major industrial waste and identification of its different constituents. Also, screening of antibacterial, antifungal and antioxidant potential of isolated oil and ethanol extract C. arabica husk, as well as its helpfulness in the treatment of diseases that might be as a cause of infection.


This research project was supported by a grant from the “Research Center of the Center for Female Scientific and Medical Colleges”, Deanship of Scientific Research, King Saud University.